A multi-omics and imaging approach to understand soil organic matter composition and its interaction with microbes.

Abstract:

The focus on soil C dynamics is currently relevant as researchers and policymakers strive to understand the feedbacks between ecosystem stress and climate change. Successful development of molecular profiles that link soil microbiology with soil carbon (C) dynamics to ascertain soil vulnerability and resilience to climate change would have great impact on assessments of soil ecosystems in response to climate change. Additionally, a better understanding of the soil C dynamics would improve climate modeling, and fate and transport of carbon across terrestrial, subsurface and atmospheric interfaces. Unravelling the wide range of possible interactions between and within the microbial communities, with minerals and organic compounds in the terrestrial ecosystem requires a multimodal, molecular approach. Here we report on the use of a combination of several molecular ‘omics’ approaches: metabolomics, metallomics, lipidomics, and proteomics coupled with a suite of high resolution imaging, and X-ray diffraction crystallographic techniques, as a novel methodology to understand SOM composition, and its interaction with microbial communities in different ecosystems, including C associated with mineral surfaces. The findings of these studies provide insights into the SOM persistence and microbial stabilization of carbon in ecosystems and reveal the powerful coupling of a multi-scale of techniques. Examples of this approach will be presented from field studies of simulated climate change, and laboratory column-grown Pinus resinosa mesocosms.