B001:
Advanced Plant Phenotyping for Global Food Security: Lessons across Measurement Scales from Leaf, to Field, to Remote Sensing





Session ID#: 25347

Session Description:
Novel approaches are being developed to quantify agriculturally important plant traits using image based technologies across scales such as high-throughput plant phenotyping platforms. The platforms offer the opportunity to integrate proximal remote sensing of intricate morphological and functional characteristics of plants in the quest to link optical plant characteristics to genomic expression to optimize yields, achieve crop efficiencies, understand resistance to stresses, and develop biomass for bioenergy and other valuable applications.

One of the major challenges associated with this emerging approach is the transferability of traits between measurement scales ranging from chamber and greenhouse based imaging, field towers and UAVs, to aircrafts and satellites. This session is designed to bridge research efforts and techniques across scales into more vertically integrated approaches. We invite speakers from diverse backgrounds and disciplines to share their findings, challenges and potential solutions associated with identification of important optical traits in plants across scales and techniques.

Primary Convener:  Tala Awada, University of Nebraska Lincoln, Lincoln, NE, United States
Convener:  George G Burba, LI-COR Biosciences, R&D, Lincoln, NE, United States

Cross-Listed:
  • GC - Global Environmental Change
Index Terms:

Abstracts Submitted to this Session:

Sruti Das Choudhury1, Tala Awada1, Ashok Samal2, Vincent Stoerger3 and Srinidhi Bashyam2, (1)University of Nebraska Lincoln, Lincoln, NE, United States, (2)University of Nebraska-Lincoln, Computer Science Engineering, Lincoln, NE, United States, (3)University of Nebraska-Lincoln, Lincoln, NE, United States
George G Burba, LI-COR Biosciences, R&D, Lincoln, NE, United States, Tom Avenson, LI-COR Biosciences, Lincoln, NE, United States, Andreas Burkart, JB Hyperspectral devices, Dusseldörf, Germany, John Arthur Gamon, Univ of Alberta, Edmonton, AB, Canada, Kaiyu Guan, University of Illinois at Urbana Champaign, National Center for Supercomputing Applications, Urbana, IL, United States; Stanford University, Stanford, CA, United States, Tommaso Julitta, University of Milan - Bicocca, Earth and Environmental Sciences, Milan, Italy, Gilberto Pastorello, Lawrence Berkeley National Lab, Berkeley, CA, United States and Karolina Sakowska, Fondazione Edmund Mach and Innovation Center, Sustainable Agro-ecosystems and Bioresources Department, San Michele all'Adige, Italy
Yeyin Shi1, Arun Narenthiran1, Jiating Li1, Yufeng Ge1, James C Schnable2, Oscar Rodriguez2, Zhikang Liang2 and Chenyong Miao2, (1)University of Nebraska Lincoln, Biological Systems Engineering, Lincoln, NE, United States, (2)University of Nebraska Lincoln, Agronomy and Horticulture, Lincoln, NE, United States
Yufeng Ge1, Geng Bai1, Suat Irmak2, Tala Awada2, Vincent Stoerger2, George Graef3, David Scoby3 and James Schnable3, (1)University of Nebraska Lincoln, Biological Systems Engineering, Lincoln, NE, United States, (2)University of Nebraska Lincoln, Lincoln, NE, United States, (3)University of Nebraska Lincoln, Agronomy & Horticulture, Lincoln, NE, United States
Judy Malas1, Jonathan R Pleban2, Diane R. Wang2, Chris Riley3 and David Scott Mackay4, (1)Loyola University Chicago, Chicago, IL, United States, (2)University at Buffalo, Buffalo, NY, United States, (3)Lancaster High School, Lancaster, NY, United States, (4)University at Buffalo, Geography, Buffalo, NY, United States
Yi Peng1, Shenghui Fang2, Kan Liu3 and Yan Gong2, (1)Wuhan, China, (2)Wuhan University, Wuhan, China, (3)Wuhan Institute of Physics and Mathematics of Chinese Academy of Sciences, Wuhan, China
Anastasios Mazis1, Patrick Morgan2, Jeremy Hiller1, Tala Awada1 and Vincent Stoerger3, (1)University of Nebraska Lincoln, Lincoln, NE, United States, (2)LI-COR, Lincoln, NE, United States, (3)University of Nebraska Lincoln, Lincoln, United States
Quanjun Jiao, LiangYun Liu and Bing Zhang, RADI Institute of Remote Sensing and Digital Earth, Chinese Academy of Sciences, Beijing, China
Yoseline Angel1, Stephen David Parkes2, Darren Turner3, Rasmus Houborg4, Arko Lucieer5 and Matthew McCabe2, (1)King Abdullah University of Science and Technology, Hydrology and Land Observation Group (HALO), Division of Biological and Environmental Science & Engineering (BESE), Thuwal, Saudi Arabia, (2)King Abdullah University of Science and Technology, Thuwal, Saudi Arabia, (3)University of Tasmania, Hobart, Australia, (4)King Abdullah University of Science and Technology, Environmental Science and Engineering, Thuwal, Saudi Arabia, (5)University of Tasmania, Geography & Environmental Studies, Hobart, Australia
Malachy Thomas Campbell1, Harkamal Walia1, Alex Grondin1 and Avi Knecht2, (1)University of Nebraska Lincoln, Agronomy, Lincoln, NE, United States, (2)University of Nebraska Lincoln, Lincoln, NE, United States
James C Schnable1, Piyush Pandey2, Yufeng Ge3, Yuhang Xu2, Yumou Qiu2 and Zhikai Liang2, (1)Organization Not Listed, Washington, DC, United States, (2)University of Nebraska, Lincoln, NE, United States, (3)University of Nebraska Lincoln, Biological Systems Engineering, Lincoln, NE, United States
Lonesome Malambo1, Sorin C Popescu2, David W Horne3, Nicholas Ace Pugh3 and William Rooney4, (1)Texas A&M University College Station, College Station, TX, United States, (2)Texas A & M University College Station, College Station, TX, United States, (3)Soil & Crop sciences, Texas A&M University, College Station, United States, (4)Texas A&M University, Department of Soil and Crop Sciences, College Station, TX, United States
Jane Asiyo Okalebo1, Sruti Das Choudhury1, Tala Awada1, Andrew Suyker2, David LeBauer3, Maria Newcomb4 and Richard Ward4, (1)University of Nebraska Lincoln, Lincoln, NE, United States, (2)University of Nebraska - Lincoln, School of Natural Resources, Lincoln, NE, United States, (3)Energy Biosciences Institute, Urbana, IL, United States, (4)University of Arizona, School of Plant Sciences, Maricopa, AZ, United States
Carmela Rosaria Guadagno1, Daniel Beverly1, Jonathan R Pleban2, Heather Nicole Speckman3, Brent E Ewers1 and C. Weinig1, (1)University of Wyoming, Botany, Laramie, WY, United States, (2)University at Buffalo, Buffalo, NY, United States, (3)University of Wyoming, WyCEHG, Laramie, WY, United States
Katherine Meacham1, Chris Montes2, Taylor Pederson3, Jin Wu4, Kaiyu Guan2 and Carl Bernacchi5,6, (1)University of Illinois at Urbana Champaign, Institute of Genomic Biology, Urbana, IL, United States, (2)University of Illinois at Urbana Champaign, Urbana, IL, United States, (3)University of Illinois at Urbana Champaign, Plant Biology, Urbana, IL, United States, (4)Brookhaven National Laboratory, Environmental and Climate Sciences Department, Upton, NY, United States, (5)University of Illinois at Urbana-Champaign, Department of Plant Biology, Urbana, IL, United States, (6)Global Change and Photosynthesis Research Unit, Agricultural Research Service, USDA, Urbana, IL, United States
Jose A. Fernandez-Gallego1, Shawn Carlisle Kefauver1, Nieves Aparicio Gutiérrez2, Maria Teresa Nieto-Taladriz3 and Jose Luis Araus1, (1)University of Barcelona, Barcelona, Spain, (2)Instituto Tecnológico Agrario de Castilla y León (ITACyL), Valladolid, Spain, (3)Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain
Omar Vergara-Diaz1, Toshihiro Obata Sr2, Shawn Carlisle Kefauver3, Alisdair Fernie Sr4 and Jose Luis Araus3, (1)University of Barcelona, B.E.E.C.A., Barcelona, Spain, (2)University of Nebraska at Lincoln, Department of Biochemistry, Lincoln, NE, United States, (3)University of Barcelona, Barcelona, Spain, (4)Max Planck Institute of Molecular Plant Physiology, Central Metabolism, Golm, Germany
Catherine Kobylinski1, Haly Neely2, Mark Edward Everett3, Dirk Boudreaux Hays1 and Katie Lewis4, (1)Texas A&M University College Station, College Station, TX, United States, (2)Texas A&M University, College Station, TX, United States, (3)Texas A & M Univ, College Station, TX, United States, (4)Texas A&M University, College Station, United States
Elena Andrea Pelech, University of Illinois at Urbana Champaign, Urbana, IL, United States, Justin McGrath, University of Illinois at Urbana Champaign, Urbana, United States, Taylor Pederson, University of Illinois at Urbana Champaign, Plant Biology, Urbana, IL, United States and Carl J. Bernacchi, United States Department of Agriculture Agricultural Research Service, Global Change and Photosynthesis Research Unit, Urbana, IL, United States
Ursula M Ruiz Vera1, Timothy H Larson2, Kisa E Mwakanyamale2, Aleel K Grennan1, Amanda P Souza1 and Donald R Ort3,4, (1)University of Illinois at Urbana Champaign, CARL R. WOESE INSTITUTE FOR GENOMIC BIOLOGY, Urbana, IL, United States, (2)Illinois State Geological Survey, Champaign, IL, United States, (3)Global Change and Photosynthesis Research Unit, Agricultural Research Service, USDA, Urbana, IL, United States, (4)University of Illinois at Urbana Champaign, Urbana, IL, United States
Matthew B Newman and Arthur I Zygielbaum, University of Nebraska Lincoln, Lincoln, NE, United States
Vijaya Gopal Kakani, Oklahoma State University, Plant and Soil Sciences, Stillwater, OK, United States, Raja Reddy Kambham, Mississippi State University, Plant and Soil Sciences, Mississippi State, MS, United States, Duli Zhao, USDA-ARS, Sugarcane Field Station, Canal Point, FL, United States, Anserd J Foster, Kansas State University, SW Extension Research Center, Garden City, KS, United States and Prasanna H Gowda, USDA ARS, Bushland, TX, United States
John Arthur Gamon and Ran Wang, University of Alberta, Edmonton, AB, Canada
Patrick S Schnable, Iowa State University, Ames, IA, United States
Darren Drewry1, Jorge C Berny-Mier y Teran2, Debsunder Dutta3 and Paul Gepts2, (1)Jet Propulsion Laboratory, Pasadena, CA, United States, (2)University of California Davis, Department of Plant Sciences, Davis, CA, United States, (3)NASA Jet Propulsion Laboratory, Pasadena, CA, United States
Christopher Nieters1, Carmela Rosaria Guadagno2, Sarah Lemli1, Atefeh Hosseini3 and Brent E Ewers2, (1)University of Wyoming, Laramie, WY, United States, (2)University of Wyoming, Botany, Laramie, WY, United States, (3)University of Hohenheim, Stuttgart, Germany
David LeBauer1,2, Rob Kooper3, Max Burnette4, Craig Willis2 and TERRA REF, (1)University of Illinois at Urbana Champaign, Carl R Woese Institute for Genomic Biology, Urbana, IL, United States, (2)National Center for Supercomputing Applications, Urbana, IL, United States, (3)National Center for Super Computing Applications, Urbana, IL, United States, (4)University of Illinois at Urbana Champaign, NCSA, Urbana, IL, United States
Joon Kim, Seoul National University, Department of Landscape Architecture & Rural Systems Engineering, Interdisciplinary Program in Agricultural and Forest Meteorology, Institute of Green Bio Science and Technology, Seoul, Korea, Republic of (South)
Corine Davids, Norut Northern Research Institute, Tromsø, Norway, Stein-Rune Karlsen, Northern Research Institute (NORUT), Tromsø, Norway, Marit Jørgensen, Norwegian Institute of Bioeconomy Research, Tromsø, Norway and Francisco Javier Ancin Murguzur, The Arctic University of Norway, Tromsø, Norway
Brent E Ewers1, Jonathan R Pleban2, T. Aston1, Daniel Beverly1, Heather Nicole Speckman3, Atefeh Hosseini4, Mario Bretfeld5, Christy Edwards6, Yulia Yarkhunova7, C. Weinig1 and David Scott Mackay8, (1)University of Wyoming, Botany, Laramie, WY, United States, (2)University at Buffalo, Buffalo, NY, United States, (3)University of Wyoming, WyCEHG, Laramie, WY, United States, (4)University of Hohenheim, Stuttgart, Germany, (5)Organization Not Listed, Washington, DC, United States, (6)Missouri Botanical Garden, St Louis, MO, United States, (7)University of Wyoming, Laramie, United States, (8)University at Buffalo, Department of Geography, Buffalo, NY, United States
Tyler W Davis1, Nathanael M. Shaw2, David J Schneider2, Jon E. Shaff2, Brandon G Larson3, Eric J Craft3, Zhigang Liu4, Leon V. Kochian2 and Miguel A. Piñeros5, (1)Organization Not Listed, Washington, DC, United States, (2)Robert W. Holley Center for Agriculture and Health, USDA-Agricultural Research Service, Ithaca, NY, United States, (3)USDA Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY, United States, (4)Cornell University, Ithaca, NY, United States, (5)Mountain View, CA, United States

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