Observations of turbulent mixing in a shallow coral reef

In situ measurements of waves, currents, and turbulence are presented to study turbulence properties within a depression that is surrounded by multiple coral-reef colonies in a fringing reef in Hobihu, Nan-Wan Bay, southern Taiwan. Turbulence was measured using a dual velocimetry technique, and wave bias contamination in the turbulence is controlled using ogive curve testing of the turbulent shear stress. The observed turbulent dissipation rate is approximately five times greater than simultaneous observations over the nearby sandy bottom site, which indicates stronger mixing within the coral reef than on sandy bottoms. Energetic downward momentum flux exists due to sweeping process; the turbulent kinetic energy is transported downward into the depression through the mechanisms of vertical turbulent transport and advection. The observed turbulent dissipation rate exceeds the shear production rate, which suggests that transport terms or other source terms might be important. The wake flow caused by the resistance force of coral colonies is examined. The form drag coefficient was estimated from the time-averaged alongshore linear momentum between two sites upstream and within the coral reef. The work done due to the form drag, which is termed the wake production, is found to strongly correlate and approximate well to the observed turbulent dissipation rate. The effects of waves and currents on the wake production are discussed. The observed TSS can be described well by classic turbulence closure model when the empirical stability function is adjusted. This study suggests that the complex canopy structure of multiple colonies and the coexistence of the wave-induced and current flows are significant factors for energetic turbulence in the coral reef, which could have positive effects to the health of the coral reefs.